Calpain-2 catalytic subunit

Protein-coding gene in the species Homo sapiens
CAPN2
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1KFU, 1KFX, 2NQA

Identifiers
AliasesCAPN2, CANP2, CANPL2, CANPml, mCANP, calpain 2
External IDsOMIM: 114230; MGI: 88264; HomoloGene: 1326; GeneCards: CAPN2; OMA:CAPN2 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for CAPN2
Genomic location for CAPN2
Band1q41Start223,701,593 bp[1]
End223,776,018 bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for CAPN2
Genomic location for CAPN2
Band1|1 H5Start182,294,825 bp[2]
End182,345,173 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • bronchial epithelial cell

  • nasal epithelium

  • glomerulus

  • mucosa of sigmoid colon

  • right uterine tube

  • parotid gland

  • metanephric glomerulus

  • parietal pleura

  • cartilage tissue

  • visceral pleura
Top expressed in
  • endothelial cell of lymphatic vessel

  • genital tubercle

  • facial motor nucleus

  • gastrula

  • belly cord

  • left lung

  • tail of embryo

  • right lung

  • right lung lobe

  • cornea
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • calcium ion binding
  • cysteine-type peptidase activity
  • metal ion binding
  • cytoskeletal protein binding
  • peptidase activity
  • protein binding
  • protein heterodimerization activity
  • hydrolase activity
  • calcium-dependent cysteine-type endopeptidase activity
  • enzyme binding
Cellular component
  • Golgi apparatus
  • pseudopodium
  • membrane
  • focal adhesion
  • perinuclear endoplasmic reticulum
  • intracellular anatomical structure
  • dendrite
  • endoplasmic reticulum
  • cortical actin cytoskeleton
  • membrane raft
  • chromatin
  • lysosome
  • extracellular exosome
  • nucleus
  • cytosol
  • cytoplasm
  • plasma membrane
  • mitochondrial intermembrane space
  • external side of plasma membrane
  • cell projection
  • neuronal cell body
Biological process
  • response to hypoxia
  • protein autoprocessing
  • proteolysis
  • cellular response to amino acid stimulus
  • myoblast fusion
  • proteolysis involved in cellular protein catabolic process
  • regulation of cytoskeleton organization
  • blastocyst development
  • extracellular matrix disassembly
  • female pregnancy
  • positive regulation of cardiac muscle cell apoptotic process
  • regulation of interleukin-6 production
  • cellular response to interferon-beta
  • response to hydrogen peroxide
  • behavioral response to pain
  • cellular response to lipopolysaccharide
  • positive regulation of neuron death
  • positive regulation of myoblast fusion
  • positive regulation of phosphatidylcholine biosynthetic process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

824

12334

Ensembl

ENSG00000162909

ENSMUSG00000026509

UniProt

P17655

O08529

RefSeq (mRNA)

NM_001146068
NM_001748

NM_009794

RefSeq (protein)

NP_001139540
NP_001739

NP_033924

Location (UCSC)Chr 1: 223.7 – 223.78 MbChr 1: 182.29 – 182.35 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Calpain-2 catalytic subunit is a protein that in humans is encoded by the CAPN2 gene.[5][6]

Function

The calpains, calcium-activated neutral proteases, are nonlysosomal, intracellular cysteine proteases. The mammalian calpains include ubiquitous, stomach-specific, and muscle-specific proteins. The ubiquitous enzymes consist of heterodimers with distinct large, catalytic subunits associated with a common small, regulatory subunit. This gene encodes the large subunit of the ubiquitous enzyme, calpain 2. Multiple heterogeneous transcriptional start sites in the 5' UTR have been reported.[7]

Interactions

CAPN2 has been shown to interact with Bcl-2.[8]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000162909 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000026509 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Imajoh S, Aoki K, Ohno S, Emori Y, Kawasaki H, Sugihara H, Suzuki K (1988). "Molecular cloning of the cDNA for the large subunit of the high-Ca2+-requiring form of human Ca2+-activated neutral protease". Biochemistry. 27 (21): 8122–8. doi:10.1021/bi00421a022. PMID 2852952.
  6. ^ Hata A, Ohno S, Akita Y, Suzuki K (May 1989). "Tandemly reiterated negative enhancer-like elements regulate transcription of a human gene for the large subunit of calcium-dependent protease". J. Biol. Chem. 264 (11): 6404–11. doi:10.1016/S0021-9258(18)83364-6. PMID 2539381.
  7. ^ "Entrez Gene: CAPN2 calpain 2, (m/II) large subunit".
  8. ^ Gil-Parrado S, Fernández-Montalván A, Assfalg-Machleidt I, Popp O, Bestvater F, Holloschi A, Knoch TA, Auerswald EA, Welsh K, Reed JC, Fritz H, Fuentes-Prior P, Spiess E, Salvesen GS, Machleidt W (Jul 2002). "Ionomycin-activated calpain triggers apoptosis. A probable role for Bcl-2 family members". J. Biol. Chem. 277 (30): 27217–26. doi:10.1074/jbc.M202945200. PMID 12000759.

Further reading

  • Suzuki K, Sorimachi H, Yoshizawa T, Kinbara K, Ishiura S (1995). "Calpain: novel family members, activation, and physiologic function". Biol. Chem. Hoppe-Seyler. 376 (9): 523–9. doi:10.1515/bchm3.1995.376.9.523. PMID 8561910.
  • Cohen GM (1997). "Caspases: the executioners of apoptosis". Biochem. J. 326 (Pt 1): 1–16. doi:10.1042/bj3260001. PMC 1218630. PMID 9337844.
  • Reverter D, Sorimachi H, Bode W (2001). "The structure of calcium-free human m-calpain: implications for calcium activation and function". Trends Cardiovasc. Med. 11 (6): 222–9. doi:10.1016/S1050-1738(01)00112-8. PMID 11673052.
  • Kopp S (1976). "Reproducibility of response to a questionnaire on symptoms of masticatory dysfunction". Community Dent Oral Epidemiol. 4 (5): 205–9. doi:10.1111/j.1600-0528.1976.tb00985.x. PMID 1067155.
  • Adachi Y, Kitahara-Ozawa A, Sugamura K, Lee WJ, Yodoi J, Maki M, Murachi T, Hatanaka M (1992). "Expression of calpain II gene in human hematopoietic system cells infected with human T-cell leukemia virus type I". J. Biol. Chem. 267 (27): 19373–8. doi:10.1016/S0021-9258(18)41785-1. PMID 1527057.
  • Ohno S, Minoshima S, Kudoh J, Fukuyama R, Shimizu Y, Ohmi-Imajoh S, Shimizu N, Suzuki K (1990). "Four genes for the calpain family locate on four distinct human chromosomes". Cytogenet. Cell Genet. 53 (4): 225–9. doi:10.1159/000132937. PMID 2209092.
  • Ishiguro H, Higashiyama S, Namikawa C, Kunimatsu M, Takano E, Tanaka K, Ohkubo I, Murachi T, Sasaki M (1987). "Interaction of human calpains I and II with high molecular weight and low molecular weight kininogens and their heavy chain: mechanism of interaction and the role of divalent cations". Biochemistry. 26 (10): 2863–70. doi:10.1021/bi00384a030. PMID 3038169.
  • Srinivasula SM, Fernandes-Alnemri T, Zangrilli J, Robertson N, Armstrong RC, Wang L, Trapani JA, Tomaselli KJ, Litwack G, Alnemri ES (1996). "The Ced-3/interleukin 1beta converting enzyme-like homolog Mch6 and the lamin-cleaving enzyme Mch2alpha are substrates for the apoptotic mediator CPP32". J. Biol. Chem. 271 (43): 27099–106. doi:10.1074/jbc.271.43.27099. PMID 8900201.
  • Corasaniti MT, Navarra M, Catani MV, Melino G, Nisticò G, Finazzi-Agrò A (1996). "NMDA and HIV-1 coat protein, GP120, produce necrotic but not apoptotic cell death in human CHP100 neuroblastoma cultures via a mechanism involving calpain". Biochem. Biophys. Res. Commun. 229 (1): 299–304. doi:10.1006/bbrc.1996.1796. PMID 8954122.
  • Fujitani K, Kambayashi J, Sakon M, Ohmi SI, Kawashima S, Yukawa M, Yano Y, Miyoshi H, Ikeda M, Shinoki N, Monden M (1997). "Identification of mu-, m-calpains and calpastatin and capture of mu-calpain activation in endothelial cells". J. Cell. Biochem. 66 (2): 197–209. doi:10.1002/(SICI)1097-4644(19970801)66:2<197::AID-JCB7>3.0.CO;2-L. PMID 9213221. S2CID 85163404.
  • Rock MT, Brooks WH, Roszman TL (1997). "Calcium-dependent signaling pathways in T cells. Potential role of calpain, protein tyrosine phosphatase 1b, and p130Cas in integrin-mediated signaling events". J. Biol. Chem. 272 (52): 33377–83. doi:10.1074/jbc.272.52.33377. PMID 9407132.
  • Ueyama H, Kumamoto T, Fujimoto S, Murakami T, Tsuda T (1998). "Expression of three calpain isoform genes in human skeletal muscles". J. Neurol. Sci. 155 (2): 163–9. doi:10.1016/S0022-510X(97)00309-2. PMID 9562261. S2CID 205898607.
  • Strobl S, Fernandez-Catalan C, Braun M, Huber R, Masumoto H, Nakagawa K, Irie A, Sorimachi H, Bourenkow G, Bartunik H, Suzuki K, Bode W (2000). "The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium". Proc. Natl. Acad. Sci. U.S.A. 97 (2): 588–92. Bibcode:2000PNAS...97..588S. doi:10.1073/pnas.97.2.588. PMC 15374. PMID 10639123.
  • Masumoto H, Nakagawa K, Irie S, Sorimachi H, Suzuki K, Bourenkov GP, Bartunik H, Fernandez-Catalan C, Bode W, Strobl S (2000). "Crystallization and preliminary X-ray analysis of recombinant full-length human m-calpain". Acta Crystallogr. D. 56 (Pt 1): 73–5. Bibcode:2000AcCrD..56...73M. doi:10.1107/S0907444999013748. PMID 10666632.
  • Chua BT, Guo K, Li P (2000). "Direct cleavage by the calcium-activated protease calpain can lead to inactivation of caspases". J. Biol. Chem. 275 (7): 5131–5. doi:10.1074/jbc.275.7.5131. PMID 10671558.
  • Lee MS, Kwon YT, Li M, Peng J, Friedlander RM, Tsai LH (2000). "Neurotoxicity induces cleavage of p35 to p25 by calpain". Nature. 405 (6784): 360–4. Bibcode:2000Natur.405..360L. doi:10.1038/35012636. PMID 10830966. S2CID 205006589.

External links

  • v
  • t
  • e
  • 1df0: CRYSTAL STRUCTURE OF M-CALPAIN
    1df0: CRYSTAL STRUCTURE OF M-CALPAIN
  • 1kfu: Crystal Structure of Human m-Calpain Form II
    1kfu: Crystal Structure of Human m-Calpain Form II
  • 1kfx: Crystal Structure of Human m-Calpain Form I
    1kfx: Crystal Structure of Human m-Calpain Form I
  • 1mdw: Crystal Structure of Calcium-Bound Protease Core of Calpain II Reveals the Basis for Intrinsic Inactivation
    1mdw: Crystal Structure of Calcium-Bound Protease Core of Calpain II Reveals the Basis for Intrinsic Inactivation
  • 1u5i: Crystal Structure analysis of rat m-calpain mutant Lys10 Thr
    1u5i: Crystal Structure analysis of rat m-calpain mutant Lys10 Thr


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