| Myzozoa | Apicomplexa | Aconoidasida | Haemospororida | - Garniidae (Garnia)
- Haemoproteidae (Haemoproteus)
- Leucocytozoidae (Leucocytozoon)
- Plasmodiidae (Plasmodium)
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Piroplasmida | - Babesiidae (Babesia)
- Theileriidae (Theileria)
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| | Agamococcidiorida | - Gemmocystidae (Gemmocystis)
- Rhytidocystidae (Rhytidocystis)
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| Adeleorina | - Adeleidae
- Dactylosomatidae
- Haemogregarinidae (Haemogregarina)
- Hepatozoidae (Hepatozoon)
- Karyolysidae (Karyolysus)
- Klossiellidae
- Legerellidae
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Eimeriorina | - Aggregatidae
- Atoxoplasmatidae
- Barrouxiidae
- Calyptosporiidae
- Caryotrophidae
- Cryptosporidiidae (Cryptosporidium)
- Eimeriidae (Cyclospora, Eimeria, Isospora)
- Elleipsisomatidae
- Lankesterellidae
- Selenococcidiidae
| Sarcocystidae | Sarcocystinae | Frenkelia, Sarcocystis |
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Toxoplasmatinae | Besnoitia, Hammondia, Hyaloklossia, Nephroisospora, Neospora, Toxoplasma |
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Ixorheorida | |
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Protococcidiorida | - Angeiocystidae (Angeiocystis)
- Eleutheroschizonidae (Coelotropha, Defretinella, Eleutheroschizon)
- Grelliidae (Coelotropha, Grellia)
- Mackinnoniidae (Mackinnonia)
- Myriosporidae (Myriosporides, Myriospora)
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Gregarinia | Archigregarinorida | - Exoschizonidae (Exoschizon)
- Selenidioididae (Filipodium, Merogregarina, Meroselenidium, Platyproteum, Selenidium, Selenidioides, Veloxidium)
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Eugregarinorida | Aseptatorina | - Aikinetocystidae
- Allantocystidae
- Diplocystidae
- Enterocystidae
- Ganymedidae
- Lecudinidae
- Monocystidae (Oligochaetocystinae, Rhynchocystinae, Stomatophorinae, Zygocystinae)
- Schaudinnellidae
- Selenidiidae
- Thiriotiidae
- Urosporidae
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Blastogregarinorina | - Siedleckiidae (Siedleckia)
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Septatorina | - Fusionicae (Fusionidae)
- Gregarinicae (Cephaloidophoridae, Cephalolobidae, Didymophoridae, Gregarinidae, Hirmocystidae, Metameridae, Uradiophoridae)
- Porosporicae (Porosporidae)
- Stenophoricae (Actinocephalidae, Acutidae, Amphiplatysporidae, Brustiophoridae, Cnemidosporidae, Dactylophoridae, Leidyanidae, Monoicidae, Monoductidae, Sphaerocystidae, Stylocephalidae, Trichorhynchidae, Stenophoridae)
- Stylocephaloidea (Blabericolidae)
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Neogregarinorida | - Schizogregarinina (Caulleryellidae, Ophryocystidae)
- Gigaductidae (Gigaductus)
- Lipotrophidae (Apicystis, Farinocystis, Lipotropha, Lipocystis, Mattesia, Menzbieria)
- Schizocystidae (Lymphotropha, Machadoella, Schizocystis)
- Syncystidae (Syncystis)
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Chromerida | - Chromeraceae (Chromera velia)
- Vitrellaceae (Vitrella brassicaformis)
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Colpodellida | - Colpodellidae (Acrocoelus, Colpodella)
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| Dinokaryota | - Dengan theca: Peridiniales (Pfiesteria, Peridinium)
- Gonyaulacales (Ceratium, Gonyaulax)
- Prorocentrales (Prorocentrum)
- Dinophysiales (Dinophysis, Histioneis, Ornithocercus, Oxyphysis)
- Tanpa theca: Gymnodiniales (Gymnodinium, Karenia, Karlodinium, Amphidinium)
- Suessiales (Polarella, Symbiodinium)
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Noctilucea | |
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Syndinea | - Syndiniales: Amoebophryaceae (Amoebophyra)
- Duboscquellaceae (Duboscquella)
- Syndiniaceae (Hematodinium, Syndinium)
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Lain-lain | |
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Protoalveolata | Algovorida | Algovoridae (Algovora) |
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Ellobiopsea | - Ellobiopsidae (Elliobiocystis, Ellobiopsis, Thalassomyces)
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Myzomonadea | Chilovorida | |
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Voromonadida | - Alphamonadidae (Alphamonas)
- Voromonadidae (Voromonas)
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Perkinsozoa | Perkinsea | - Perkinsidae (Perkinsus)
- Phagodinida (Phagodinium)
- Rastromonadida (Parvilucifera, Rastromonas)
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Tidak diklasifikasikan | |
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